#NEXUS [written Tue May 08 11:42:53 BOT 2012 by Mesquite version 2.75 (build 566) at Volva/136.145.86.55] BEGIN TAXA; TITLE Sequences; DIMENSIONS NTAX=34; TAXLABELS Deinopis_spinosa_GB Argiope_argentata_GB Nephila_inaurata_NE22_Mauritius Nephilengys_malabarensis_GB Herennia_multipuncta_GB Clitaetra_thisbe_CL30 Clitaetra_thisbe_CL31 Clitaetra_perroti_CL1_Am Clitaetra_perroti_CL2_Am Clitaetra_perroti_CL3_Am Clitaetra_perroti_CL4_Am Clitaetra_perroti_CL5_Am Clitaetra_perroti_CL7_Am Clitaetra_perroti_CL9_Am Clitaetra_perroti_CL10_Am Clitaetra_perroti_CL11_Am Clitaetra_perroti_CL8_Am Clitaetra_clathrata1 Clitaetra_clathrata2 Clitaetra_perroti_CL12_Mont Clitaetra_perroti_CL14_Mont Clitaetra_perroti_CL15_Mont Clitaetra_perroti_CL16_Mont Clitaetra_perroti_CL13_Mont Clitaetra_episinoides_CL17 Clitaetra_episinoides_CL18 Clitaetra_episinoides_CL19 Clitaetra_episinoides_CL20 Clitaetra_irenae_CL25 Clitaetra_irenae_CL21 Clitaetra_irenae_CL23 Clitaetra_irenae_CL26 Clitaetra_irenae_CL28 Clitaetra_irenae_CL22 ; END; BEGIN CHARACTERS; TITLE 'CO1 (from Phred/Phrap)'; DIMENSIONS NCHAR=1908; FORMAT DATATYPE = DNA GAP = - MISSING = ?; CHARSTATELABELS 1 Clitaetra_W_Africa1, 1347 Clitaetra_CL18, 1348 'gggacgAtgaagaatgcagcgaaatgcgatacgtaatgtgaattgcaGaattcagtgaatcatcgagtc-ttTgaacgcacaT--TGCGCCCcctggTATTCCGGGGggcatGCCTGtccgagcgtcattgctgccctcaagcacggCTtgTGTgTTGGGCCCCCGTcCCCCCCCaagGGGACGGGCCCGAAAGGCAgcGGC-Ggcac-cgTGTcCGGTCCTcgagcgtaTgggAAGcaactttttttgtcacccgctcctgtaggtccggccggcggcctgcccaaccccaacctttt-------------------------------------------------' ; MATRIX Deinopis_spinosa_GB --------AACATTATATTTATTGTTTGGTGCGTGATCAGCTATAGCTGGTACTGCAATAAGAGTTTTAATTCGTACTGAATTAGGTCAGCCTGGAAGTTTATTGGGTGATGATCATTTATATAATGTTATTGTTACTGCTCATGCTTTTGTTATAATTTTTTTTATAGTAATACCAATTTTAATTGGTGGATTTGGTAATTGATTAGTACCTTTAATGTTAGGGGCACCTGATATAGCTTTTCCGCGAATAAATAATTTAAGTTTTTGATTATTACCTCCTTCATTATTTTTATTGTTTATTTCTTCTTTAGTAGAAGTAGGTGTAGGTTCAGGATGAACTGTATATCCTCCTTTAGCGTCTAGAGTTGGTCATGCTGGAAGTTCTGTGGATTTTGCTATTTTTTCTTTACATTTAGCTGGTGCTTCTTCTATTATAGGAGCTATTAATTTTATTTCTACTATTTTAAATATACGGTCATGAGGTATAACTATAGAGAAGGTTCCTTTATTTGTTTGGTCTGTTTTAGTTACAGCTATTTTATTATTATTATCTTTGCCTGTGTTAGCAGGTGCTATTACTATATTATTAACTGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGGGGAGATCCAGTTCTATTTCAACATTTATTT???????????TCATCCTGAAGTTTATATTTTAATTTTACCTGGTTTTGGAATTGTATCTCATATTATTAGATCTGCCGTAGGTAAGCGGGAACCTTTTGGTAGTTTAGGAATAATTTATGCTATAGTAGGAATTGGAGGTATAGGATTTGTAGTATGAGCGCATCATATATTTTCTGTTGGTATAGATGTAGATACTCGAGCTTATTTTACTGCTGCTACTATAATTATCGCTGTGCCTACTGGAATTAAGGTTTTTAGATGAATAGCCACATTACATGGATCTTATTTTAAAATAGATACCCCATTAATATGATGTATTGGATTTGTGTTTTTATTTACTTTAGGAGGGATTACTGGTGTAGTATTATCAAATTCTTCTTTAGATATTGTTTTACATGATACTTATTATGTAGTGGCTCATTTTCATTATGTGCTTAGAATAGGAGCTGTATTTGCTATTTTAGCTGGAATTACTTATTGATTTCCGTTATTTTTTGGTATTATTTTAAATTCAAAAAAATCTAAGCTTCAATTTTATATTATATTTTTAGGTGTTAATATAACTTTCTTTCCTCAACATTTTTTAGGTTTAAATGGAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Argiope_argentata_GB --------TACTTTATATTTAATTTTTGGAGCTTGGGCTGCCATAGTAGGTACAGCGATAAGAGTATTAATTCGAATTGAATTGGGACAACCAGGAAGATTTATAGGTGATGATCAGTTATATAATGTAATTGTTACAGCTCATGCATTTGTAATAATTTTTTTTATAGTAATACCAATTTTAATTGGAGGATTTGGAAATTGATTGGTTCCTTTAATGCTAGGAGCTCCTGATATAGCATTTCCTCGAATAAATAATTTAAGATTTTGGTTATTACCTCCTTCATTATTTCTTTTAATTGTTTCTTCTATAGTAGAAATAGGAGTGGGAGCAGGATGAACCGTTTATCCTCCTTTAGCTGGATTAGAAGGACATGCTGGGAGATCAGTAGATTTTGCTATTTTTTCTCTTCATTTAGCTGGGGCATCTTCAATTATAGGAGCAATTAATTTTATTTCTACAATTATTAATATACGATTTTATGGGATAACTATAGAAAAGGTTCCATTATTTGTATGATCAGTTTTAATTACTGCGGTTTTATTATTACTTTCTTTACCTGTATTAGCAGGTGCTATTACTATATTATTGACTGATCGAAATTTTAATACTTCTTTTTTCGATCCTTCGGGTGGGGGGGATCCTATTTTGTTTCAACATTTATTT???????????GCATCCTGAAGTTTATATTTTGATTTTACCAGGATTTGGAATTGTATCACATATTATTAGATCTTCTGTAGGAAAGCGAGAGCCTTTTGGAAATTTAGGAATGATCTATGCTATAGTAGGAATTGGAGGAATAGGATTTGTAGTATGGGCTCATCATATATTTTCTGTAGGTATAGATGTAGATACTCGGGCTTATTTTACTGCTGCAACAATAATTATTGCTGTACCTACTGGAATTAAGGTATTTAGATGAATAGCAACTCTTCACGGATCTTATTTTAAGTTTGATACTCCTTTAATATGATGTATTGGATTTATTTTTTTATTTACAATAGGGGGAATTACTGGAGTAGTATTATCTAATTCCTCTTTAGATATTGTTCTTCATGATACTTATTATGTGGTAGCTCATTTTCATTATGTTTTAAGAATAGGAGCAGTATTTGCAATTTTAGCTGGAATTACATATTGATTTCCTTTATTTTTTGGAATAGTGATAAATGGTAAAAAGACTAAGTTGCAATTTTATGTTATGTTTGTAGGTGTTAATATAACTTTCTTTCCTCAGCATTTTTTAGGTTTAAATGGTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Nephila_inaurata_NE22_Mauritius --------AACATTATATTTAATTTTTGGAGCTTGAGCAGCAATATTAGGAACTGCAATAAGAGTGTTAATTCGAATTGAGCTTGGACAACCAGGAAGGTTTGTAGGTGATGATCAATTATATAATGTAATTGTTACGGCTCATGCTTTTGTAATAATTTTTTTTATAGTAATACCAATTTTAATTGGAGGATTTGGAAATTGGTTAGTTCCTTTAATATTAGGGGCTCCAGATATAGCATTTCCTCGAATGAATAATTTAAGGTTTTGATTATTACCTCCTTCATTATTTTTATTATTAATTTCTTCAATAGTAGAAATAGGTGTAGGTGCTGGATGAACTGTTTATCCGCCTTTAGCATCTTTAGATGGACATGCTGGAAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGTGCATCTTCAATTATAGGAGCTATTAATTTTATTTCTACTATTATGAATATACGATCGTATGGAATATCTATAGAAAAAGTTCCTTTATTTGTCTGATCGGTATTGATTACCGCTGTTTTATTATTATTATCTTTACCTGTATTAGCAGGTGCAATTACTATATTATTAACTGATCGTAATTTTAATACTTCGTTTTTTGATCCTTCAGGTGGAGGTGATCCAATTTTATTTCAACATTTATTTTGATTTTTTGGACATCCTGAAGTTTATATTTTAATTTTACCTGGGTTTGGAATTGTATCTCATATTATTAGTGCATCAGTTGGAAAGCGTGAGCCATTTGGTAATTTAGGAATAATTTATGCAATAGTAGGGATTGGAGGAATAGGATTTGTAGTGTGAGCTCATCATATATTTTCTGTAGGAATGGATGTGGATACTCGTGCATATTTTACTGCTGCAACTATAATTATTGCTGTTCCTACTGGAATTAAGGTTTTTAGTTGAATAGCAACTCTTCATGGATCATATTTTAAATTAGAGACATCTTTATTATGATGTATAGGGTTTGTTTTTTTATTTACATTAGGTGGAATTACTGGGGTAGTGCTATCTAATTCTTCATTAGATATTATTTTACATGATACTTATTATGTAGTAGCTCATTTTCATTATGTACTAAGAATAGGAGCTGTATTTGCAATTTTAGGGGGAATTACTTATTGGTTTCCTTTATTTTTTGGTGTAATTTTTAATCAAAAAAAAAGGAAGCTTCAATTTTATATTATATTTATTGGGGTGAATATGACTT------------------------------------------------------ttattgatatgcttaagttcggcg----ggttct---YtY---g---tYtg--atccgaggtc-------------------------------------------------------------------GCTTT-------------CTCTCT--TCGCCG-TCC----------ACCGc--------------TGGGGCGgACAcY--tCC-----G--CC---TCT-----------TCTCG-------ACC---CACGGG-------------------TACCG------------------------------GGAC-------CCG---AAAGG-----CC-GTCAc--------GgG----AAT-CGT-CGGTCCCT---------------------------------------AgGTTGGATGC------------------------------------GACCCTCGGACAGGCGAGGCT--CCACCCCCGAA-----GGGAAGGAGCCGCAATGTGC-GTTCGAaTAA-TCAGCg-A----TC------tgagtgttctgcaattMacWccaaatctcKcaSctggctgcgttctt------------ Nephilengys_malabarensis_GB --------AACACTGTATTTAGTGTTTGGGGCTTGAGCGGCTATAGTTGGGACTGCTATGAGTGTATTAATTCGCACGGAATTGGGTCAATCGGGAAGATTGATGGGTGATGATCAATTATATAATGTAATTGTAACTGCTCATGCTTTTGTAATAATTTTTTTTATAGTAATACCTATTTTAATTGGGGGTTTTGGTAATTGATTGGTTCCTTTAATGTTAGGTGCTCCTGACATAGCCTTTCCTCGAATAAATAATTTAAGATTTTGGTTGTTACCACCCTCATTGTTTTTATTATTTGTTTCGTCAATAGTTGAGATAGGGGTAGGGGCTGGTTGAACTGTTTATCCGCCCTTAGCCTCATTAGAAGGTCATTCGGGTAGTTCAGTAGATTTTGCTATTTTTTCTTTACATTTAGCTGGTGCTTCATCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATACGGAATAACTATGGAGAAAGTACCCTTATTTGTTTGATCTGTTTTAATTACTGCTATTTTATTACTTTTATCTTTGCCTGTTTTGGCAGGTGCAATTACTATACTACTAACAGATCGAAATTTTAATACCTCATTTTTTGATCCATCTGGAGGGGGGGATCCTATTTTATTTCAACATTTATTTTGGTTTTTTGGCCATCCTGAGGTATATATTTTAATTCTTCCTGGATTTGGAATTGTTTCACATATTATTAGCGCTTCCGTAGGAAAGCGTGAACCGTTTGGAAATCTAGGCATAATTTATGCTATAGTTGGAATTGGTGGAATGGGTTTTGTAGTGTGAGCTCATCATATATTTTCTGTGGGAATAGATGTAGATACTCGAGCTTATTTTACAGCTGCAACTATAATTATTGCGGTCCCAACAGGAATTAAAGTTTTTAGTTGAATAGCAACTCTTCATGGTTCTTATTTTAAATTAGAAACCCCTTTATTATGGTGTGTTGGGTTTGTGTTTTTATTTACATTAGGGGGTATCACAGGGGTGGTATTATCTAATTCCTCTTTAGATATTATTTTACATGATACTTATTATGTGGTGGCTCATTTTCATTACGTATTAAGAATAGGGGCGGTTTTTGCTATTTTAGGTGGAATTACTTATTGATTTCCTCTATTTTTTGGGGTTGTTTTTAATGGTAAGAAAAGAAAGCTTCAGTTTTATATTATGTTTGTGGGGGTAAATATAACTTTTTTTCCTCAGCACTTTTTAGGTTTAAATGGAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Herennia_multipuncta_GB ------------------------------------TCGGCTATAGTTGGAACTGCTATAAGAGTTTTAATTCGAATTGAATTGGGTCAACCAGGGAGTTTTATAGGGGATGATCAATTATACAATGTAATTGTAACGGCGCATGCATTTGTAATAATTTTTTTTATAGTAATACCTATTTTAATTGGTGGTTTTGGAAATTGGTTGGTTCCTTTAATATTGGGGGCGCCTGATATAGCATTTCCTCGAATAAATAATTTGAGATTTTGATTATTACCTCCTTCATTGTTTTTATTATTTATTTCATCAATAGTAGAAATGGGAGTAGGGGCTGGATGAACTGTATATCCTCCTTTAGCTTCATTAGAAGGTCATTCTGGAAATTCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGGGCATCATCCATTATAGGGGCTATTAATTTTATTTCTACAATTATAAATATACGATCCTATGGAATATCTATAGAGAAAGTTCCTTTATTTGTATGATCTGTATTGATTACAGCTGTCTTATTATTATTATCATTACCTGTATTAGCAGGTGCTATTACTATATTGTTAACGGATCGAAATTTTAATACTTCATTTTTTGACCCTTCTGGGGGGGGTGATCCTATTTTATTTCAACATTTATTTTGATTTTTTGGTCATCCTGAAGTATATATCTTAATTCTTCCCGGATTTGGAATTGTTTCTCATGTTATTAGAGCATCAGTAGGAAAGCGTGAACCATTTGGAAACTTAGGAATAATCTATGCTATAGTGGGAATTGGTGGAATGGGATTTGTTGTATGAGCTCATCATATATTTTCTGTTGGTATAGATGTTGATACTCGGGCATATTTTACTGCTGCTACTATAATTATTGCAGTTCCTACTGGTATTAAAGTTTTTAGTTGAATAGCAACTCTTCATGGATCTTATTTTAAATTAGATACTCCTTTATTGTGATGTATAGGTTTTGTTTTTTTGTTCACTTTAGGGGGGATTACTGGGGTAGTTTTATCTAATTCTTCATTGGATATCATTTTACATGACACTTATTATGTAGTAGCTCATTTTCATTATGTTTTAAGAATAGGGGCTGTGTTTGCTATTTTAGGAGGTATTACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_thisbe_CL30 ----------cattatatttaatttttggagcttgagcggcaatATTAGGAACAGCAATAAGAGTATTAATTCGAATTGAACTTGGGCAAACAGGAAGGTTTATGGGTGATGATCAATTATACAATGTAATTGTAACGGCTCATGCTTTTGTAATGATTTTTTTTATAGTAATACCAATTATAATTGGTGGTTTTGGAAATTGACTGGTACCTTTAATATTAGGAGCTCCTGATATAGCATTTCCTCGTATAAATAATTTAAGATTTTGATTACTTCCTCCTTCGCTATTTTTATTACTTATTTCTTCAATAGTTGAAATGGGGGTAGGAACTGGGTGAACAGTGTATCCTCCTCTGGCATCTTTACAAGGACATGCTGGGAGTTCTGTAGATTTTGCTATTTTTTCTTTACATTTGGCGGGTGCTTCTTCAATTATAGGGGCTATTAATTTTATTTCAACAATTTTAAATATGCGGTCATATGATATAACTATAGAGAAGGTTCCTTTATTTGTTTGATCTGTGTTAGTCACTGCTATTTTATTATTATTATCATTACCAGTATTGGCAGGAGCAATTACAATATTATTAACTGATCGGAATTTTAATACATctTTTTTtgacccttcaggagggggggatcctattttatttcaacatttattttgatttttgggtcatccggaggtatatattttaattcttccagggttgggaattgtttctcatgtaattagggcttcggttgggaagcgggagccttttggaaAtttaggaataATTTatgctataattggaattggaggaataggatttgtagtgtgggcccaccacataTTTtcagtgggGAtAgatgtgGatactcgggcgtaTTtCactgcagcaactatAATTAttgcggtTcCAACTGGAATTAAAATTTttagatgAATAGCTACTTTACATGGTTCTTATTATAAAATGGATAcAtCTTTATTGtGGTGTATAGGGTTTGTTTTTTTATTTACTTtAGGGGgAATtaccgGAGTAGTTTtATCAAATTCttcATTAGACATtATTCTTCATGAcACGTATTATGTAgtagCTCaTTTTCaTtAtGTTTTAagaataggtgctgtatttgctaTTTtaggggggattacctattgatttcctttattttttggttttgttttta----------------------------------------------------------------------------------------------------------------------------------cggcgcgtgggttctgcgctttcagtgaatta--at---a---ct------------------------------------------------------------------atWWta-------------------------g-TAC----------ATTTT--------------Taggccg---actttgCCTA---gcaacKatact-----------taTCAGC-----AACGA-TACGG----------------------CCA------------------------------ATAC-------CTAA--AAAGG-----tc-g--aA--------GAGG---GGT--GTCAGGCctcca--------------------------------------agGTTAG----------------------------------------GACTCTcAGACAGACGAG--------CCCTCAAAGA---GGG-------CGCCatgtgc-gttcgaaggg-tgagcg-c----tcgaaagatg--------------------------------------------------------- Clitaetra_thisbe_CL31 ----------cattatatttaatttttggagcttgagcggcaatATTAGGAACAGCAATAAGAGTATTAATTCGAATTGAACTTGGGCAAACAGGAAGGTTTATGGGTGATGATCAATTATACAATGTAATTGTAACGGCTCATGCTTTTGTAATGATTTTTTTTATAGTAATACCAATTATAATTGGTGGTTTTGGAAATTGACTGGTACCTTTAATATTAGGAGCTCCTGATATAGCATTTCCTCGTATAAATAATTTAAGATTTTGATTACTTCCTCCTTCGCTATTTTTATTACTTATTTCTTCAATAGTTGAAATGGGGGTAGGAACTGGGTGAACAGTGTATCCTCCTCTGGCATCTTTACAAGGACATGCTGGGAGTTCTGTAGATTTTGCTATTTTTTCTTTACATTTGGCGGGTGCTTCTTCAATTATAGGGGCTATTAATTTTATTTCAACAATTTTAAATATGCGGTCATATGATATAACTATAGAGAAGGTTCCTTTATTTGTTTGATCTGTGTTAGTCACTGCTATTTTATTATTATTATCATTACCAGTATTGGCAGGAGCAATTACAATATTATTAACTGATCGGAATTTTAATACATctTTTTTtgacccttcaggagggggggatcctattttatttcaacatttattttga-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tatcaGC-----AACGA-TACGG----------------------CCA------------------------------ATAC-------CTAA--AAAGG-----Tc-g--aA--------GAGG---GGT--GTCAGGCctcca--------------------------------------aGGTTAG----------------------------------------GACTCTCAGACAGACGAG--------CCCTCAAAGA---GGG-------CGCCatgtgc-gttcgaaggg-tgagcg-c----tcgaaagat---------------------------------------------------------- Clitaetra_perroti_CL1_Am -------------tatatttaatttttggtgcttgagcggcAATGGTTGGGACTGCAATAAGAGTTTTAATTCGTACAGAATTAGGGCAGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTATTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTAGCAGGTGCAATTACTATATTATTAACTGatcgtAATTTTAATACTTCTTTTTTTGACCcttcagggGGaggagatcctattttgtttcaacatt-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------aWattttcagtgggtatagatgtggatacccgtgcgtatttcacagcggctactataattattgcggttcctactggaattaaaatttttagatgaATagctactcttcatggatcatattTTAAAttagaaacacctTtactatggtgtaTAGGATTTGTTttcttatTTACTttaggagGAATTACTGGGGTTGTTTTATCAAATTCTTCTTTGGATATTGTgcttcatGAtActtatTATgtagtagcCCATTTTCATTATGTTTTAAgAAtAGGggctgtaTTTGCAATTTTAGGGGGAATTACTTATTGatTtcctttatTTTTTGGGATAATATTTAATggtaAGAAAAgaaagctTCRATTtTATaTTAtatttgtaggagttAatataactttttttcctcaacatttt--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL2_Am ---------------------------------tgagcggcaatggtTGGGACTGCAATAAGAGtTTTAATTCGTACAGAATTAGGGCAGcCTggAaGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTGTTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTAGCAGGTGCAATTACTATATTATTAaCtgatCgtaaTTTTAATacttctttttttgacccttcagggggaggagatcctattttgtttcaacatttattttgattttttggt------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Clitaetra_perroti_CL3_Am --------------atatttaatttttggtgcttgagcggcaatGGTTGGGACTGCAATAAGAGTTTTAATTCGTACAGAATTAGGGCAGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTGTTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATtaGCAGGTGCAATTACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTtgacccttcagggggaggagatcctattttgtttcaacatttattttgattttttg-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL4_Am --------------atatttaatttttggtgcttgagcggcaatggTTGggactGcaaTaaGAGTTTTAATTCGTACAGAATTAGGGCAGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTGTTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTAGCAGGTGCAATTACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGacccttcagggggaggagatcctattttgtttcaacatttattttgatttttTgggcatccggaggtatatattttaattttacctggatttggtattgtttctcacatTattagtgcttcggtaggaaagcgtgaaccgtttggtaatttgggtaTAATTtatgcTATagtaggaattggggggaTaGGTTtTGtagtatGAGCTCATCATATATTTTCAGTGGGTATAGATGTGGATACCCGTGCGTATTTCACAGCGGCtACTATAATTATTGCGGTTCctactggaATTAAAATTTTTAGATGAATAGctaCTcTTCATGGATCATATTTTAAATTAGAAACACCTTTActaTGGTGTATAGGATTTGTTTTCtTATTTACTTTAGGAGGAATTACTGGGGTTGTTTTATCAAATTCTTCTTTGGATATtGTGCTTCATGATACTTATTATGTAGTAGCCCATTTTCATTATGTTTTAAGAATAGGGGCTGTATTTGCAATTTTAGGGGGAATTACTTATTGAtttCcttTAtTTTTTGGGATAATATTTAATGGTAAgAAAAGAAagcTTCAATTTTATATTATATTTGTAGGAGTTAATATAactttttttcctcaacattttctaggtttaaatgggatacctcgacgat-------------tgatatgcttaagttcagcg----ggt-at---ccc--ta---cctg--atccgagGTCAAC----c--tggt---TAAA--GTAAAAA--------------gGTTGG-G--gt-TG---GGC-AG----GCCGCCGGCCGGAC----------------CTACA----GGAGCGGGTGACAAAAAAAGTTG---------CT--TCCCATA------------------CGCTC--------GAGGACCGGACACGG----TGC-------------CGCCG-----------CTGC-CT-TTCGGGCC------CGTC----CCCTTGGGGGG---G----GACGG--------GGGCC-C-AA-CAC-ACAAGCCG---------------------------------------TGCTTGAGGGCA-------------GC-----------------AATGACGCTCGGACAGGC-ATGCC-----CCCCGGAATACCAGGG----GGC-GCAATGTG-C-gttCaaagactcgatgat----tca---ctGaa---ttctgcaattcacattacgtatcgcatttcgctgcgttcttcatcgtcccaa- Clitaetra_perroti_CL5_Am ---------acattatatttaatttttggtgcttgagcggcaatgGTTGgGactgCAATAAGAGTTTTAATTCGTACAGAATTAGGGCAGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTATTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTaGCAGGTGCAATTACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTtgaccc---------------------------------------------ttttgggcatccggaggtatatattttaattttacctggatttggtattgtttctcacatTattagtgcttcggtaggaaagcgtgaaccgtttggtaatttgggtataATttatgctatagtaggaattggggggaTAGgttttgtagtatgagCtcaTCATATATTTTCAGtGGGTATagaTGTGGATACCcgtgcgTATTTCACAGCGGCTACTATAATTATTGCGGtTCcTACTGGAATTAAAATTtTTAGATGAATAGCTaCTCTTcATGGATCATATTTTAAATTAGAAACACCTTTaCTATGGTGTATAGGATTTGTTTTCTTATTTACTTTAgGAGGAATTACTGGGGTTGTTTTATCAAATTCTTCTTTGGATATTGTGCTTCAtGATACTTATTATGtAGtagCCCatTTTCaTTATGTTTTAAGAATAGGGGCTGTatttgcAATTTTAGGGGGAATtacttattgatttcctttaTTTTTTGGGATAATATTTAATGGTAAGAAAAGAAAgcTTCAATTTTATATTATATTtgTAGGAGTTAATATAActttttttcctcaacattttctaggtttaaatgggatacctcgacSat----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL7_Am ---------------------------------------gcaatggTTGggactgcAATAAgAGTTTTAATTCGTACAGAATTAGGGCAGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTATTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTAGCAGGTGCAATTACTATATTATTAACTGatcgtAaTtTTAATACTTCTtTTTTTgacccttcaggGGGAgK-------------------------------------------------------------------------------attgtttctcacattattagtgcttcggtaggaaagcgtgaaCCgtttggtaatttgggtataatttatgctatagtaggaattggggggaTAGGTTTTGTAGTATGAGCTCATCaTATATTTTCAGTGGGTATAGATGTGGATACCCGTGCGTATTTCACagcggctaCTATAATTATTGCGGTTCCTACTGgAATTAAAATTTTtAGATGAATAGCTACTCTTCATGGATCATATTTTAAATTAGAAACACCTTTActaTGGTGTATAGGATTTGTTTTCTTATTTACTTTAGGAGGAATTActgGGGTTGTTTTATCAAATTCTTCTTTGGATATtGTgCttcatgaTACTTATTATGTAGTAgCCCATTTTCATTATGTTTTAAGAATAGGGGCTGTATTTGCAATTTTAGGGGGAATTACTTATTGATTTccttTATTTTTTGGGATAATATTTAATGGTAAGAAAaGAAagCTTCAATTTTATATTAtatttgtagGaGTTAATATAactttttttcctcaacattttc------------------------------------ttaTTgaTATGCTTAAGttcagcg----ggt-at---ccc--ta---cctg--atccgaGGTCAAC----C--Tggt---taaa--gtaaaaa--------------ggtTGg-G--GT-Tg---gGC-aG----gCCGccGgCcggac----------------ctACA----GGAGcgGgTGaCaAAaAAAGTTg---------cT--TCcCATA------------------CGCTC--------GAggACcgGAcACGG----TGC-------------CGcCG-----------CTgC-CT-TTCGGGCC------cgTC----CcCTtGGGGgG---G----GACGG--------GgGCc-c-aA-Cac-AcAAGCCg---------------------------------------TGCTTGAGGgCA-------------GC-----------------AATGACGCTcGGACAGGC-ATGCC-----CCCCGGAATACCAGGG----GGC-GCAATGTG-C-gTTCAAAgAcTCgATGat----tca---ctgaa---ttctgcaattcacattacgtatcgcaTtTcgcTGcgttctTcat--------- Clitaetra_perroti_CL9_Am gatattggaacattatatttaatttttggtgcttgagcggcaatggttGGGACTGCAATAAGAGTTTTAATTCGTACAGAATTAGGGCAGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTATTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTAGCAGGTGCAATTACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTttgacccttcagggggaggagatcctattttgtttcaacatttattt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttgatatgcttaagttcagcg----ggt-at---ccc--ta---cctg--atcCGAGGTCAAC----C--TGGT---TAAA--GTAAAAA--------------GGTTGG-G--GT-TG---GGC-AG----GCCGCCGGCCGGAC----------------CTACA----GGAGCGGGTGACAAAAAAAGTTG---------CT--TCCCATA------------------CGCTC--------GAGGACCGGACACGG----TGC-------------CGCCG-----------CTGC-CT-TTCGGGCC------CGTC----CCCTTGGGGGG---G----GACGG--------GGGCC-C-AA-CAC-ACAAGCCG---------------------------------------TGCTTGAGGGCA-------------GC-----------------AATGACGCTCGGACAGGC-ATGCC-----CCCCGGAATACCAGGG----GGC-GCAATGTG-C-GTTCAAAGACTCGATGAT----TCA---CTGAA---TTCTGCAATtcacattacgtatcgcatttcgctgcgtt--------------- Clitaetra_perroti_CL10_Am ------ggaacattatatttaatttttggtgcttgagcggcaatggttgGgactGCAATAAGAGTTTTAATTCGTACAGAATTAGGGCAGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTATTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTaGCAGGTGCAATTACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTtgacccttcagggggaggagatcctat-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ctccgcttattgATATgctTAAGTTcagcg----ggT-At---ccc--ta---cctg--atccgagGTCaAC----C--TGGT---TAAA--GTAAAAA--------------GGTTGG-G--GT-TG---GGC-AG----GCCGCCGGCcGGac----------------CTACA----GGAGCGGGTGACAAAAAAAGTTG---------CT--TCCCATA------------------CGCTC--------GAGGACCGGACACGG----TGC-------------CGCCG-----------CTGC-CT-TTCGGGCC------CGTC----CCCTTGGGGGG---G----GACGG--------GGGCC-C-AA-CAC-ACAAGCCG---------------------------------------TGCTTGAGGGCA-------------GC-----------------AATGACgCTCGGACAGGC-ATGCC-----CCCCGGAATACCAGGG----GGC-GCAATGTG-c-gttCAAagaCTcgaTGAT----TCa---ctgaA---tTCTGCAATtcaCaTtacgtatcgcatttcgctgcgtt--------------- Clitaetra_perroti_CL11_Am ---------------tatttaatttttggtgcttgagcggcaatGGTTGGGactGCAATAAGAGTTTTAATTCGTACAGAATTAGGGCAGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTATTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTAGCAGGTGCAATTACTATATTATTAACTGatcgtAATTTTAATACTTCTTTTTTTGac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Clitaetra_perroti_CL8_Am -------------tatatttaatttttggtgcttgagcggcaatggTTGGGACTGCAATAAGAGTTTTAATTCGTACAGAATTAGGGCaGCCTGGAAGATTTATGGGGGATGACCAATTATATAATGTAATTGTAACAGCGCATGCTTTTGTAATAATTTTTTTTATAGTGATGCCAATTTTAATTGGAGGTTTTGGTAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGGATGAATAATTTAAGATTTTGGTTATTACCTCCCTCATTATTTTTATTATTTATTTCTTCTATAGTAGAAATGGGGGTAGGATCTGGATGAACAGTATATCCTCCGTTAGCTTCTTTAGAGGGACATTCAGGGAGGTCTGTTGATTTTGCTATTTTTTCTCTGCATTTAGCTGGGGCTTCTTCAATTATAGGCGCTATTAATTTTATTTCTACAATTATAAATATACGATCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGGTCTGTTTTAATTACTGCGGTTTTATTACTTTTGTCTTTACCTGTATTAGCAGGTGCAATTACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTtg-------------------------------------------ttgattttttgggcatccggaggtatatattttaattttacctggatttggtattgtttctcacattattagtgcttcggtaggaaagcgtGAACCgtttggtAatttgggtataatttatgctaTagtaggaattgGGGGGaTAGGTTTTGtagtatgagcTCATCATATATTTTCAGtGGGTATagATGTGGATACCCgtgCGTATTTCACAGCGGCTACTATAATTATTGCGGTTCCTActGgAATTAAAATTTTTAGATGAATAGCtaCTCTTCATGGATCatATTTTAAATTAgAAACACCTTTaCTATGGTGTATAGGATTTGTTTTCTTATTTACTTTAGGAGGAATTACTGGGGTTGTTTTATCAAATTCTTCTTTGGATATTGTGCTTcatGATACTTATTATGTAGTAGCCCATTTTCATTATGTTTTAAGAATAGGGGCTGTATTTGCaATTTTAGGGGGAATTACTTATTGAtttcctttaTTTTTTGGGATAATATTTAatggtAAGAAAaGAAagCTTCAATTTTATATTATATTTgTAGgagTTAATATaactttttttcctcaacattttctaggtttaaatgggatacctcgacgatc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_clathrata1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aacgtgagccttttggtaatttaggaataatttatgctatagttggaattggaggtataggttttgttgtttgggcacatcatatattttcggtaggtatagatgttgatacgcgtgcatattttacagcagctaMtataattattggggttcctactggaattaaAATTTTtaGatgaAtagctACTcTTcatgggtcAtATTTTaAGTTAGAAacMcctTTATTatgRtgTAtaGGATTTGtATTTtTATTTACTTTGGGGGGGATTACTGGAGTTGTTTTgTCaAATTCTTcTTTAGATATTGtTctTcatGATACTTATTATGTtGtagCtCAtTTTCattatgTATTAAGaaTAGGAGctGtatTTGCGATTTtagggggaattacttattgatttatttgatTTTTTGGAATATTGTTTaATTTAAAAaAAAGGAAactgcagtttTATATtatatttGTAGGAGTaaatataacaattttcc----------------------------------------tcctccgcttattgatatgcttaagttcagcg----ggtcgt---ctc---g---cctg---tCTGAGGTC----------TCGT---GAAA--G-AAGAA-CCC--GCTCTTCGGACTGC-A--ACGTG---TGC-AGCTTTGATGCCGGTCCGACTCC----GCGCCA-CCCTCC------GA-CGCGT--CA-------TCGAGGC-----CC--CCCCGTAGG--CC---CCT---ACGCGCTCCCTCGGAAgGGGATCGGGCGTGGGAGATGCG-----------TCACCGAA---CA----TCGCACT-T--GGGCCGACGGACGCCATAACCGCTAAAAGGTTAGTCC-GACGC--------GG--C-C-AA-T-T-GGAACCCT---------------------------------------CGCTCGAGTGCAT---CGAGAGAGGGCTTCCTGA----GAAGGAAAAGACGCTCAGACAGAcGAGGCCAGCGACCTCGG-------GGGTCGTGGCCGCCATGCG-c-gtcAAAAGA-tgggtg-t----tc------Saagtgtcctgcaattcacaccaattctcgcagcgtgctgcgttcttcatcgt------ Clitaetra_clathrata2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcttattgatatgcttaagttcagcg----ggtcgt---ctc---g---cctg---tctgaggtc----------tcgt---gaaa--g-aagaa-ccc--gctcttcggactgc-a--acgtg---tgc-agctttgatgccggtccgacTcc----gcgCCa-ccctcc------ga-cgcgt--ca-------tcgaggc-----cC--CCccgtagg--cc---cct---acgcgctccctcggaaggGgatcgggcgtgggagatgcg-----------tcaccgAA---ca----tcgcact-t--gggccgacggacgccataaccgctaaaaggttagtcc-gacgc--------gg--c-c-aa-t-t-ggaACcct---------------------------------------cgctcgagtgcat---cgagagagggCTtcctga----gaaggaaaagacgctcagacagacgaggccagcgacctcgg-------gggtcgtggccgccatgcg-c-gtcaaaaga-tg----------------------------------------------------------------------------- Clitaetra_perroti_CL12_Mont -----------gttaTatttaatttttggtgcttgagcggcaataGtTGGGACTGCAATAAGAGTTTTGATTCGAACAGAGCTAGGACAACCTGGAAGATTTATAGGGGATGACCAATTATATAATGTAATTGTAACAGCTCATGCTTTTGTAATAATTTTTTTTATGGTAATACCTATTTTAATTGGAGGTTTTGGAAATTGGTTGGTTCCGTTAATATTAGGGGCTCCTGATATAGCATTTCCTCGAATAAATAATTTGAGATTTTGATTATTACCTCCTTCTTTAATTTTATTATTTGTTTCTTCTATAGTAGAGATAGGGGTAGGGTCTGGATGAACAGTTTATCCTCCGTTAGCTTCTTTAGAGGGCCATTCAGATAGATCTGTAGATTTCGCTATTTTCTCTTTACATTTAGCTGGAGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCTACAATTATAAATATACGGTCGTATGGAATAACTATAGATAAAGTTCCTTTATTTGTTTGGTCTGTTTTAATTACTGCGGTTTTACTACTTTTATCTTTACCTGTGTTGGCAGGTGCAATCACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGACccctcggggggaggggatcctattttatttcaacatt-------gatttttgggcacccagaggtttatattttaattttacctggatttggaattgtttctcatattattagcgcttcggtaggaaagcgcgaaccatttggaaatttgggaataatttatgctatagtaggaattgggggaatggggtttgtagtatgagctcatcatatattttcggttggaatggatgtagaTacacgTgcATATTTTACagcagctaCTATAATtattgcagttcctactgGAATTAAAATTTTtagatggatagctactcttcAtggttcStatTTTAAATTagagacatctctattaTGGTGTATAGGGTTTGTTTTTTTATTtactttaGGGGGGATTACTGGAGTTGTTTTatcaaatTCttctttgGATATtgtacttCAtgATACTtATTATGTagtagctcattTTcattacgtATtaagaataggagccgtatTtgcaatTTtaggGGGGGttacttattgatttcctttgTTTTttggatttgtaTttAatcaaaAAAaaagtaagcttcaattttatattatatttataggagtaaAtataacttttttccctcaacattttttaggattgaatggaat---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL14_Mont ---------------------------ggtgcttgagcggcaatAGTTGGGACTGCAATAAGAGTTTTGATTCGAACAGAGCTAGGACAACCTGGAAGATTTATAGGGGATGACCAATTATATAATGTAATTGTAACAGCTCATGCTTTTGTAATAATTTTTTTTATGGTAATACCTATTTTAATTGGAGGTTTTGGAAATTGGTTGGTTCCGTTAATATTAGGGGCTCCTGATATAGCATTTCCTCGAATAAATAATTTGAGATTTTGATTATTACCTCCTTCTTTAATTTTATTATTTATTTCTTCTATAGTAGAGATAGGGGTAGGGTCTGGATGAACAGTTTATCCTCCGTTAGCTTCTTTAGAGGGCCATTCAGATAGATCTGTAGATTTCGCTATTTTCTCTTTACATTTAGCTGGAGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCTACAATTATAAATATACGGTCGTATGGAATAACTATAGATAAAGTTCCTTTATTTGTTTGGTCTGTTTTAATTACTGCGGTTTTACTACTTTTATCTTTACCTGTGTTGGCAGGTGCAATCACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGacccctcggggggaggggatcctattttatttcaacatttattttga------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cttaagttcagcg----ggt-at---ccc--ta---cctg--atccgaggtcaac----c--tggt---taaa--gtaaaaa--------------ggttgg-g--gt-tg---gGC-Ag----gccgccggccggac----------------ctaca----GGAgCGGGTGACAAAaAAAGTTg---------Ct--TCCCATA------------------CGCTC--------GAGGACCGGACACGG----TGC-------------CGCCG-----------CTGC-CT-TTCGGGCC------CGTC----CCCTTGGGGGG---G----GACGG--------GGGCC-C-AA-CAC-ACAAGCCG---------------------------------------TGCTTGAGGGCA-------------gC-----------------AATGACGCTCGGACAGGC-ATGCC-----CCCCGGAATACCAGGG----GGC-GCAATgtg-c-gttCaaagactcgatgaT----TCa---ctgaA---TTCTGCAATTCAcaTTacgtAtcgcaTtTcgctgcgtt--------------- Clitaetra_perroti_CL15_Mont -------------------------------------cggcaataGTTGGgactgCAATAAGAGTTTTGATTCGAACAGAGCTAGGACAACCTGGAAGATTTATAGGGGATGACCAATTATATAATGTAATTGTAACAGCTCATGCTTTTGTAATAATTTTTTTTATGGTAATACCTATTTTAATTGGAGGTTTTGGAAATTGGTTGGTTCCGTTAATATTAGGGGCTCCTGATATAGCATTTCCTCGAATAAATAATTTGAGATTTTGATTATTACCTCCTTCTTTAATTTTATTATTTATTTCTTCTATAGTAGAGATAGGGGTAGGGTCTGGATGAACAGTTTATCCTCCGTTAGCTTCTTTAGAGGGCCATTCAGATAGATCTGTAGATTTCGCTATTTTCTCTTTACATTTAGCTGGAGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCTACAATTATAAATATACGGTCGTATGGAATAACTATAGATAAAGTTCCTTTATTTGTTTGGTCTGTTTTAATTACTGCGGTTTTACTACTTTTATCTTTACCTGTGTTGGCAGGTGCAATCACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTTgacccctcggggggaggggatcctattttatttcaacatttattttg--------------------------ttttaattttacctggatttggaatTGTTTCtcatattaTTagcgcttCggTaGGAAAGCgcgAACCATTTGGAaatttgggaATAATTTATGCTATAGtaGGAATTGGGGGAATGGGGTTtGTAGTATGAGCTCATCATATATtTTCGGTTGGAATAGaTGTAGATACACGTGCATATTTTACAGCaGcTACTATAATTAttGCaGTTCCTACTGGGATTAAAATTTTTAGAtggATaGctACTCTTCatGGTTCGTATTTTAAATTAGAGACATCTCtATTATGGTGTATAGGGTTTGTTTTTTTATTTACTTTAGGGGGGATTactggaGTTGTTTTATcaaATTCTTCTTTGGATATTGTACTTcatgaTACTTATTATGTAGTagctcatttTCATTAcgtATTAAGAATAGGAgccgtatttgcAATTTTaggGGGGGTTACTTATTGATTTCCTTTGTTTTTTGGATTTGTATTTAATCAAAAAAAAAGgaagctTCAatttTATATcatatttatagGagtAaAtataacttttttccctcaacattttttaggattgaatggaatacctcg---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL16_Mont ----------------------------------gagcggcaatagttgggactGCAATAAGAGTTTTGATTCGAACAGAGCTAGGACAACCTGGAAGATTTATAGGGGATGACCAATTATATAATGTAATTGTAACAGCTCATGCTTTTGTAATAATTTTTTTTATGGTAATACCTATTTTAATTGGAGGTTTTGGAAATTGGTTGGTTCCGTTAATATTAGGGGCTCCTGATATAGCATTTCCTCGAATAAATAATTTGAGATTTTGATTATTACCTCCTTCTTTAATTTTATTATTTATTTCTTCTATAGTAGAGATAGGGGTAGGGTCTGGATGAACAGTTTATCCTCCGTTAGCTTCTTTAGAGGGCCATTCAGATAGATCTGTAGATTTCGCTATTTTCTCTTTACATTTAGCTGGAGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCTACAATTATAAATATACGGTCGTATGGAATAACTATAGATAAAGTTCCTTTATTTGTTTGGTCTGTTTTAATTACTGCGGTTTTACTACTTTTATCTTTACCTGTGTTGGCAGGTGCAATCACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGAcccctcggggggag----------------------------ttgattttttgggcacccagaggtttatattttaattttacctggatttggaattgtttctcatattattagcgcttcggtaggaaagcgcgaaccatttggaAatttgggaataatttatgctatagtgggaattgggggaatggggtttgtagtatgagctcAtcataTATTTtcggttggaaKggatgtagatacacgtgCATATTTTACAGcagctACTATAATTAtTgcagTTCcTactgGaATTAAAATTTttagatggatagctACTCTTCaTGgttSgtaTTTTaAATTagagacatctctattatgGtgtAtaGGGTTTGTTTTTTTaTTTACtTTAGGGGGGATTACTGGAGTTGTTTTATCAAATTCTTCTTTGGATATTGTACTTcatgaTACTTATTatgTagtagctcatTtTCAttacgtatTAAGAATAGGAgccgtATTTGCAATTTTAGGGGGGGTTActtATtgaTttcctttgttttttgGATTTGTATTTAATCAAAAAaAAaGtaagcttcaaTTTtAtatTATATTtataggagtAAAtataacttttttc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL13_Mont ---------------------atttttggtgcttgagcggcaatAgtTGggactgCAATAAGAGTTTTGATTCGAACAGAGCTAGGacaacctggaAGATTTATAGGGGATGACCAATTATATAATGTAATtgtaACAGCTCATGCTTTTGTAATAATTTTTTTTATGGTAATACCTATTTTAATTGGAGGTTTTGGAAATTGGTTGGTTCCGTTAATATTAGGGGCTCCTGATATAGCATTTCCTCGAATAAATAATTTGAGATTTTGATTATTACCTCCTTCTTTAATTTTATTATTTGTTTCTTCTATAGTAGAGATAGGGGTAGGGTCTGGATGAACAGTTTATCCTCCGTTAGCTTCTTTAGAGGGCCATTCAGATAGATCTGTAGATTTCGCTATTTTCTCTTTACATTTAGCTGGAGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCTACAATTATAAATATACGGTCGTATGGAATAACTATAGATAAAGTTCCTTTATTTGTTTGGTCTGTTTTAATTACTGCGGTTTTACTACTTTTATCTTTACCTGTGTTGGCAGGTGCAATCACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTtgacccctcggggggaggggatcctattttatttcaacatttattttgatttttt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ctccgcttattgATAtgctTAAGTtcagcg----ggt-At---Ccc--ta---cctg--ATccgAGGTCAAC----C--TGGT---TAAA--GTAAaaa--------------ggTTGG-G--GT-TG---GGC-AG----GccgccgGCCGGAC----------------CTACA----GGAGCGGGTGACAAAAAAAGTTG---------CT--TCCCATA------------------CGCTC--------GAGGACCGGACACGG----TGC-------------CGCCG-----------CTGC-CT-TTCGGGCC------CGTC----CCCTTGGGGGG---G----GACGG--------GGGCC-C-AA-CAC-ACAAGCCG---------------------------------------TGCTTGAGGGCA-------------GC-----------------AATGACGCTCGGACAGGC-ATGCC-----CCCCGGAATAcCAGGG----GGC-GCAATGTG-C-GTTCAAAGACTCGATGAT----TCA---CTGAA---TTCTGCAATTCACATtacgtatcgcATTTCGCTGCgtTCTTcatcgtc----- Clitaetra_episinoides_CL17 --tattggaacMttataYttaMtttttggtScctgagcggcaatAGttGGTAcTGCAaTAAGAGTTTTAATTCGGACTGAATTAGGTCAGTCTGGAAGATTTATAGGAGATGATCAATTATATAATGTAATTGTAACGGCGCATGCTTTTGTAATAATTTTTTTTATAGTTATACCTATTTTAATTGGAGGTTTTGGAAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATGGTAGAAATAGGTGTGGGTTCTGGATGAACAGTTTATCCTCCATTAGCCTCTTTAGAAGGTCATTCAGGAAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCGGGAGCTTCTTCAATTATAGGAGCTATTAATTTTATTTCTACAATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGATCTGTTTTAATTACTGCGGTTTTACTTCTTTTATCATTACCTGTTTTAGCAGGTGCGATTACTATATTATTAACTGATCGAAATTTTAATAcaTCTTTTTttgatccttcaggaggaggagatcctattttatttcagcatttattttga------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaattagaaactcctttgttatggaGaataggttttgtttttttaTTTActctaggtggtattactggagttgttttatcaaattcttctttagatatcattcttcatgatacgtattatgtggtggCTCattttcattatgtattaagaataggagctgtgttTgctattttaggaggaattacttattggtttccttTATTttttggaataatatttagtaataaaaaaagtaaacttcaattttatattatatttgtaggggttaatataactttttttcctcaacattttttaggattaaatggaatacctcgacgata---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_episinoides_CL18 ----------------------------gtgcctgagcggcaataGTTGGTACTGCAATAAGAGTTTTAATTCGGACTGAATTAGGTCAGTCTGGAAGATTTATAGGAGATGATCAATTATATAATGTAATTGTAACGGCGCATGCTTTTGTAATAATTTTTTTTATAGTTATACCTATTTTAATTGGAGGTTTTGGAAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATGGTAGAAATAGGTGTGGGTTCTGGATGAACAGTTTATCCTCCATTAGCCTCTTTAGAAGGTCATTCAGGAAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCGGGAGCTTCTTCAATTATAGGAGCTATTAATTTTATTTCTACAATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGATCTGTTTTAATTACTGCGGTTTTACTTCTTTTATCATTACCTGTTTTAGCAGGTGCGATTACTATATTATTAACTGATCGAAATTTTAATACATCTTTTTTtgatccttcaggaggaggagatcctattttatttca-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gt-tg---ggc-ag----gccgccggccggac----------------ctaca----ggagcgGGtgacaaaaaaaGTtg---------cT--tCCCATA------------------CGCtc--------gaggaccgGAcacgg----tgc-------------cgccg-----------ctgC-CT-ttcggGCC------CGTC----CCCTTGGGGGG---G----GACGG--------GGGCC-C-AA-CAC-ACAAGCCG---------------------------------------TGCTTGAGGGCA-------------GC-----------------AATGACGCTCGGACAGGC-ATGCC-----CCCCGGAATACCAGgG----GGC-GCAATGTG-C-GTTCAAAGACTcgaTGAT----TCA---CTGAA---TTCTGCAATTCACATTacgTATCGCATttcgctGcgTtctTCATcgtc----c Clitaetra_episinoides_CL19 ---------------tatttaatttttggtgcctgagcggcaataGTTGGTACTGCAATAAGAGTTTTAATTCGGACTGAATTAGGTCAGTCTGGAAGATTTATAGGAGATGATCAATTATATAATGTAATTGTAACGGCGCATGCTTTTGTAATAATTTTTTTTATAGTTATACCTATTTTAATTGGAGGTTTTGGAAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATGGTAGAAATAGGTGTGGGTTCTGGATGAACAGTTTATCCTCCATTAGCCTCTTTAGAAGGTCATTCAGGAAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCGGGAGCTTCTTCAATTATAGGAGCTATTAATTTTATTTCTACAATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGATCTGTTTTAATTACTGCGGTTTTACTTCTTTTATCATTACCTGTTTTAGCAGGTGCGATTACTATATTATTAACTGATCGAAATTTTAATACATCTTTTTTTGatccttcaggaggaggagatcctattttatttc-----------------------------------tatatcttaattttaccaggatttggtattgtatcacAtattattagtgcttcagtagggaagcgtgaaccttttgggaatttaggaataatctatgctatagtaggaattggtggtataggatttgttgtttgagctCACCATATATTTTCAgtAGGgatagatgttgatACacgtgcaTATTTcacagcagCTACTATAATTAttgcgGtTccTaCtGGTATTAAAATTTTTAGATGAATAGCTACTCTTCATGGATCTTATTTTAAATTAGAAACTCCTTTGTTATGGAGAATAGGTTTTGTTTTTTTATTTACTCTAGGTGGTATTACTGGAGTTGTTTTATCAAATTCTTCTTTAGATATCATTCTTCaTGATACGTATTATGTGGTGGCTCATTTTCATTATGTATTAAGAATAGGAGCTGTGTTTGCTATTTTAGGAGGAATTACTTATTGGTTTCCTTTATTTTTTGGAATAATATTTAGTAATAAAAAAAGTAAACTTCAATTTTATATTATATTTGTAggggTTAATATAActttttttcctcaacattttttaggattaaatggaatacctcgac-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_episinoides_CL20 ----------------------tttttggtgcctgagcggcaataGTTGGTACTGCAATAAGAGTTTTAATTCGGACTGAATTAGGTCAGTCTGGAAGATTTATAGGAGATGATCAATTATATAATGTAATTGTAACGGCGCATGCTTTTGTAATAATTTTTTTTATAGTTATACCTATTTTAATTGGAGGTTTTGGAAATTGATTAGTTCCATTAATATTAGGGGCTCCTGATATAGCATTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATGGTAGAAATAGGTGTGGGTTCTGGATGAACAGTTTATCCTCCATTAGCCTCTTTAGAAGGTCATTCAGGAAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCGGGAGCTTCTTCAATTATAGGAGCTATTAATTTTATTTCTACAATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTATGATCTGTTTTAATTACTGCGGTTTTACTTCTTTTATCATTACCTGTTTTAGCAGGTGCGATTACTATATTATTAACTGATCGAAATTTTAATACATCttttTttgatccttcaggaggaggagatcctattttatttcagcattttttgattttttgggtcatcctggaggtatatatcttaattttaccaggatttggtattgtatcacatattattagtgcttcagtagggaagcgtgaaccttttgggaatttaggaataatctatgctatagtaggAAttggtggtataggatttgttgtttgaGCTCAccatatattttCAGtaGggATAGatgttgataCacgtgcaTATTtcacaGcagctactataaTTattgcGGtTCCtactggtATTAAAATTTTtagatGAAtagctACTcttcatgGATctTATTTTAAATTAGAAactccTTTGttatggaGAATAGGTTTTGTTTTTTTATTTACtctagGTGGtattactggagttgttttATCAAattcttctttAGATATCattcttcatgatACgTattatGTGGTGGCTCATTTTCATtatgtattaAGaataggagctGTgtttgctattttaggaggaattacttattggtttcctttattttttggaataatatttagtaataaaaaaagt--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_irenae_CL25 ----ttggtacattatatttaatttttggagcttgagcggctatagtaggaaCTGCAataaGAGTATTAATTCGGATAGAATTGGGTCAACCTGGTAGATTTTTAGGAGATAATCAATTATATAATGTAATTGTAACGGCACATGCTTTTGTTATAATTTTTTTTATGGTAATACCTATTTTAATTGGGGGATTTGGAAATTGATTGGTACCTTTAATATTAGGGGCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATAGTAGAAGTAGGTGTAGGTTCCGGATGAACTGTATATCCTCCTTTAGCTTCTTTAGAAGGACATTCTGGGAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGGGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCCACGATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTTTGATCAGTATTAATTACTGCTATTTTATTACTTTTATCTTTGCCTGTTTTAGCAGGAGCTATTACAATATTGTTAACTGATCGAAatttTAATACATCTTTTTTtgatccttcagggggaggggatcctattttgt------------------tttttggtcatcctgaagtttatattttaattttacctggatttggtattgtttctcatatTATtagttcttcagtaggAAAgcgtgagCCTTTTggaAATttaggtATAATTTATGCTATAGTAGGAATTGGAGGAATAGGTTTTGTTGTtTGAGCTCATCATATATTTTCGGTTGGAATAGATGTAGATAcgcgtgCATATTTTACAGCGGcTACTATAATTATTGCGGTACCTACTGGTATTAAAATTTTTAGATGGATAGCTACTCTTCATGGCTCATATTTTAAGTTAGATACACCTTTATTATGGAGAATAGGTTTTGTATTTTTATTTACTTTAGGAGGTATTACAGGTGTTGTATTATCAAATTCTTCTTTAGATATTGTGCTTCATGATACTTATTATGTTGTAgCCCATTTTCATTATGTATTAAGAATAGGAGCTGTTTTTGCAATTTTAGGAGGAATCACTTATTGGTTTCCTTTATTTTTTGGTATATTATTTAATTCAAAAAAAAGTAAACTTCAATTTTTTATTATGTTTGTAGGAGTAAATATAActttTtttcctcMacattttttaggattaaatggtatacctcgac-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_irenae_CL21 -------------tatatttaatttttggagcttgagcggctatagtaggaactgcaataagAGTATTAattcgGATAGAATTGGGTCAACCTGGTAGATTTTTAGGAGATAATCAATTATATAATGTAATTGTAACGGCACATGCTTTTGTTATAATTTTTTTTATGGTAATACCTATTTTAATTGGGGGATTTGGAAATTGATTGGTACCTTTAATATTAGGGGCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATAGTAGAAGTAGGTGTAGGTTCCGGATGAACTGTATATCCTCCTTTAGCTTCTTTAGAAGGACATTCTGGGAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGGGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCCACGATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTTTGATCAGTATTAATTACTGCTATTTTATTACTTTTATCTTTGCCTGTTTTAGCAGGAGCTATTACAATATTGTTAACTGATCGaaaTTTTAATACATCTTTTTttgatccttcagggggaggggatcctattttgtttcaacatt----------------tcatcctgaagtttatattTtaattttacctggatttggtattgtttctcataTtattagttcttcagtaggaaagcgtgagccttttggaAatttaggtaTAATttatgctatagtaggaattggaggaataggttTTGTTGTttgagCTCAtcaTATATtttcggTtGGAATAGATGTAGATacgcgtgCATATTTTAcagcgGcTACTATAATTATTgcggTACCTActgGTATTAAAATTTTTAGATGGATAGCTACTCTTCaTGGctCATATTTTAAGTtAGATACACCTTTATTATGGAGAATAGGTTTTGTATTTTTATTTACTTTAGGAGGTATTACAGGTGTTGTATTATCAAATTCTTCTTTAGATATTGTGCTTCATGATACTTATTATGTTGTAGCCCATTTTCATTATGTATTAAGAATAGGAGCTGTTTTTGCAATTTTAGGAGGAATCACTTATtGGTTTCCTTTATTTTTTGGTATATTATTTAATTCAAAAAAAAGTaAACTTCAATTTTTTATTATGTTTGTAGGAGTAAATATaacttTttttcctcaacattttttaggattaaatggta---------------------------------ttaagttcggcg----ggtgat---ctcg-Ygtg-tctgaggtccgcgg--gact---c-ggggc---CAGA--gTCCgAG--------------GTCCGCGCCGTCTCGCAtgGC-ACCC--GC-GCGAGGCGGAC----------------CT-CA----GCACCGAACGA---------TT----------CC--TctCGGACCGC--------------CGCTCCC------G----CCGCACGCGT----CAT---------CGGGGTCCGTG-----CTTCATCCCCTCTCGGCGCT------CACC----CC----GAGGGT--GAGGGGCGGGTAGTCCGTCCGTCGGAAT-CGAACGGCGCCG-CACTTGAGCCGACGGAAACGTGAAACGAATTCCGACGCGGCCAATGGGCACTCCCGGAGGAGTGCCTGAGA-------AGTACGGGACGCTCAGACACACGAGGCCAGCGACCTCgG-------gggTCgTGgCcGCTATgCg-C-gTTCAActaattggcgatc---------------------------------------------------------------------- Clitaetra_irenae_CL23 -atattggtacattatatttaatttttggagcttgagcggctatagtaggaaCTGCAATAAGAGTATTAATTCGGATAGAATTGGGTCAACCTGGTAGATTTTTAGGAGATAATCAATTATATAATGTAATTGTAACGGCACATGCTTTTGTTATAATTTTTTTTATGGTAATACCTATTTTAATTGGGGGATTTGGAAATTGATTGGTACCTTTAATATTAGGGGCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATAGTAGAAGTAGGTGTAGGTTCCGGATGAACTGTATATCCTCCTTTAGCTTCTTTAGAAGGACATTCTGGGAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGGGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCCACGATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTTTGATCAGTATTAATTACTGCTATTTTATTACTTTTATCTTTGCCTGTTTTAGCAGGAGCTATTACAATATTGTTAACTGATCGAAATTTtaatacaTCTTTTTTtgatccttcagggggaggggatcctattttgtttcaacatttattttg--------------ctgaagtttatattttaattttacctggatttggtattgtttctcatattattagttcttcagtaggaaagcgtgagccttttggaaATTTaggtataatttatgctatagtaggaattggagGAAtAGGTTtTGTTGTTTGAgCtCAtcATATATTTTCGGTTGGAATAGATGTAGATACgcgtGCATATTTTACAgcggcTactaTAATTATtgcgGTACCTACTGGTATTAAAATTTTTAGATGGATagctACTCTtcatGGcTCATATTTTAAGTTAGATACACCTTTATTATGGAGAATAGGTTTTGTATTTTTATTTACTTTAGGAGGTATTACAGGTGTTGTATTATCAAATTCTTCTTTAGATATTGTGCTTCaTGATACTTATTATGTTGTAGCCCATTTTCATTATGTATTAAGAATAGGAGCTGTTTTTGCAATTTTAGGAGGAATCACTTATTGGTTTCCTTTATTTTTTGGTATATTATTTAATTCAAAAAAAAGTAAACTTCAATTTTTTATTATGTTTGTAGGAGTAAATATAactttTtttcctcaacattttttaggattaaatggtatacc------------------------------------------------------------------------------------------gggc---caga--gtccgag--------------gtccgCgccgtctcgcatggc-accc--gc-gcgaggcggac----------------Ct-ca----gcACCGAACGA---------TT----------Cc--tctcgGACCGC--------------CGCTCCC------G----CCGCACGCGT----CAT---------CGGGGTCCGTG-----CTTCATCCCCTCTCGGCGCT------CACC----CC----GAGGGT--GAGGGGCGGGTAGTCCGTCCGTCGGAAT-CGAACGGCGCCG-CACTTGAGCCGACGGAAACGTGAAACGAAtTCCGACGCGGCCAATGGgCACTCCCggAGgagtgcctgaga-------agtacgggacgctcagacacacgaggccagcgacctcgg-------gggtcgtggccgctatgcg-c-gttcaactaat------------------------------------------------------------------------------ Clitaetra_irenae_CL26 -------------tatatttaatttttggagcttgagcgGCTATAGTAGgAACTGCAATAAGAGTATTAATTCGGATAGAATTGGGTCAACCTGGTAGATTTTTAGGAGATAATCAATTATATAATGTAATTGTAACGGCACATGCTTTTGTTATAATTTTTTTTATGGTAATACCTATTTTAATTGGGGGATTTGGAAATTGATTGGTACCTTTAATATTAGGGGCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATAGTAGAAGTAGGTGTAGGTTCCGGATGAACTGTATATCCTCCTTTAGCTTCTTTAGAAGGACATTCTGGGAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGGGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCCACGATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTTTGATCAGTATTAATTACTGCTATTTTATTACTTTTATCTTTGCCTGTTTTAGCAGGAGCTATTaCAATATTGTTAACTGATCGAAATTTTAATACATCTTTTTTTgatccttcagggggaggggatcctat------------------------------------tgaagtttatattttaattttacctggatttggtattgtttctcatattattagttcttcagtaggaaagcgtgagcctTTTGGAAATTTaggtataATTtatgctATAGTAGGAaTTGGAgGaATAGGTTtTGTTGTTTGAGCTCATcATATATTTTCGGTTGGAATAGATGTAGATACgcgTGcATATTTTAcagcgGcTACTATAATTATTGCGGTACCTACTGGTATTAAAATTTTTAGATGGATAGCTACTCTtcatGGcTCATATTTTAAGTTAGATACACCTTTATTATGGAGAATAGGTTTTGTATTTTTATTTACTTTAGGAGGTATTACAGGTGTTGTATTATCAAATTCTTCTTTAGATATTGTGCTTCATGATACTTATTATGTTGTAGCCCATTTTCATTATGTATTAAGAATAGGAGCTGTTTTTGCAATTTTAGGAGGAATCAcTTATTGgTTTCCTTTATTTTTTGGTATATTATTTAATTCAAAAAAAAGTAAACTTCAATTTTTTATTATgtttgtAgGAGTAAATATAActttttttcctcaacattttttaggattaaatggtatacctcgacca------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Clitaetra_irenae_CL28 ------ggtacattatatttaatttttggaGCttGAGCGGCTATAGTaggaacTGCAATAAGAGTATTAATTCGGATAGAATTGGGTCAACCTGGTAGATTTTTAGGAGATAATCAATTATATAATGTAATTGTAACGGCACATGCTTTTGTTATAATTTTTTTTATGGTAATACCTATTTTAATTGGGGGATTTGGAAATTGATTGGTACCTTTAATATTAGGGGCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATAGTAGAAGTAGGTGTAGGTTCCGGATGAACTGTATATCCTCCTTTAGCTTCTTTAGAAGGACATTCTGGGAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGGGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCCACGATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTTTGATCAGTATTAATTACTGCTATTTTATTACTTTTATCTTTGCCTGTTTTAGCAGGAGCTATTACAATATTGTTAACTGATCGAAATTTTAATACATCTTTTTTtgatccttcagggggagggga-----------------------------------gtcatcctgaagtttatattttaattttacctggatttggtattgtttctcatattattagttcttcagtaggaaagcgtgagccttttggaAATTtaggtATAATTtatgctatagtaggaattgGaggaAtaggtTtTGTTGTTTGAgCTCATCATATATTTTCgGTTGGAATAGATGTagATACgcgTGCATATTTTACAGCGGCTACTATAATTATTGCGGTACCTACTGGTATTAAAATTTTTAGATGGATAGCTACTCTTCATGGCTCATATTTTAAGTTaGATACACCTTTATTATGGAGAATAGGTTTTGTATTTTTATTTACTTTAGGAGGTATTACAGGTGTTGTATTATCAAATTCTTCTTTAGATATTGTGCTTCATGATACTTATTATGTTGTAGCCCATTTTCATTATGTATTAAGAATAGGAGCTGTTTTTGCAATTTTAGGAgGAATCACTTATTGGTTTCCTTTATTTTTTGGTATATTATTTAATTCAAAAAAAAGTAAACTTCAATTTTTTATTATGTTTGTAggagTAAATATaactttTtttcctcaacattttttaggattaaatggtatacctcg---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_irenae_CL22 -atattggtacattatatttaatttttggagcttgagcggctatagtaggaacTGCAATAAGAGTATTAATTCGGATAGAATTGGGTCaACCTGGTAGATTTTTAGGAGATAATCAATTATATAATGTAATTGTAACGGCACATGCTTTTGTTATAATTTTTTTTATGGTAATACCTATTTTAATTGGGGGATTTGGAAATTGATTGGTACCTTTAATATTAGGGGCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGACTTTTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATAGTAGAAGTAGGTGTAGGTTCCGGATGAACTGTATATCCTCCTTTAGCTTCTTTAGAAGGACATTCTGGGAGATCTGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGGGCTTCTTCAATTATAGGTGCTATTAATTTTATTTCCACGATTATAAATATACGTTCATATGGAATAACTATAGAAAAAGTTCCTTTATTTGTTTGATCAGTATTAATTACTGCTATTTTATTACTTTTATCTTTGCCTGTTTTAGCAGGAGCTATTACAATATTGTTAACTGATCGAAATTTTAATACATCTTTTTTtgatccttcagggggaggggatcctattttgtttcaacatttattttgat----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------act---c-ggggc---caga--gtccgag--------------gtccgCGCCGTctCGcatggc-accc--gC-GCgagGCGGAC----------------CT-CA----GCACcgaacga---------TT----------Cc--tctcggaccgc--------------cgctCCC------G----CCgcacgcgt----cat---------CGGGGTCCGTG-----CTTCATCCCCTCTCGGCGCT------CACC----CC----GAGGGT--GAGGGGCGGGTAGTCCGTCCGTCGGAAT-CGAACGGCGCCG-CaCTtgaGCCGACGGAAACGTGAAACGaattcCGACGCGGCCAATGGGCACTCCCGgagGaGtGCCTGAGA-------AGTACGGGAcgctcagaCacacgaggccagcgacctcgg-------gggtcgtGGCCGCTaTGCg-c-gtTcAactaAttggcgatcgt-------------------------------------------------------------------- ; END; BEGIN CHARACTERS; TITLE 'Protein translation of CO1 (from Phred/Phrap)'; DIMENSIONS NCHAR=427; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Deinopis_spinosa_GB ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Argiope_argentata_GB ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Nephila_inaurata_NE22_Mauritius ---TLYLIFGAWAAMLGTAMSVLIRIELGQPGSFVGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLLISSMVEMGVGAGWTVYPPLASLDGHAGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKVFSWMATLHGSYFKLETSLLWCMGFVFLFTLGGITGVVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGVIFNQKKSKLQFYIMFIGVNMT---------------- Nephilengys_malabarensis_GB ---TLYLVFGAWAAMVGTAMSVLIRTELGQSGSLMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFVSSMVEMGVGAGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKVFSWMATLHGSYFKLETPLLWCVGFVFLFTLGGITGVVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGVVFNGKKSKLQFYIMFVGVNMTFFPQHFLGLNGM---- Herennia_multipuncta_GB ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_thisbe_CL30 ----LYLIFGAWAAMLGTAMSVLIRIELGQTGSFMGDDQLYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLLISSMVEMGVGTGWTVYPPLASLQGHAGSSVDFAIFSLHLAGASSIMGAINFISTILNMRSYDMTMEKVPLFVWSVLVTAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFWFLGHPEVYILILPGLGIVSHVISASVGKREPFGNLGMIYAMIGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYYKMDTSLLWCMGFVFLFTLGGITGVVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGFVF----------------------------------- Clitaetra_thisbe_CL31 ----LYLIFGAWAAMLGTAMSVLIRIELGQTGSFMGDDQLYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLLISSMVEMGVGTGWTVYPPLASLQGHAGSSVDFAIFSLHLAGASSIMGAINFISTILNMRSYDMTMEKVPLFVWSVLVTAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Clitaetra_perroti_CL1_Am -----YLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQH----------------------------------------------------------{K M}FSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETPLLWCMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMMFNGKKSKL{Q R}FYIMFVGVNMTFFPQHF---------- Clitaetra_perroti_CL2_Am -----------WAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFWFFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL3_Am -----YLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFWFF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL4_Am -----YLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETPLLWCMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMMFNGKKSKLQFYIMFVGVNMTFFPQHFLGLNGMPRR- Clitaetra_perroti_CL5_Am ---TLYLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFD----------------FGHPEVYILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETPLLWCMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMMFNGKKSKLQFYIMFVGVNMTFFPQHFLGLNGMPR{P R}- Clitaetra_perroti_CL7_Am -------------AMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGG---------------------------IVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETPLLWCMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMMFNGKKSKLQFYIMFVGVNMTFFPQHF---------- Clitaetra_perroti_CL9_Am DIGTLYLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL10_Am --GTLYLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL11_Am -----YLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL8_Am -----YLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFF---------------WFFGHPEVYILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETPLLWCMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMMFNGKKSKLQFYIMFVGVNMTFFPQHFLGLNGMPRR- Clitaetra_clathrata1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_clathrata2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_perroti_CL12_Mont ----LYLIFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLILLFVSSMVEMGVGSGWTVYPPLASLEGHSDSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMDKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQH---IFGHPEVYILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETSLLWCMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGVTYWFPLFFGFVFNQKKSKLQFYIMFMGVNMTFFPQHFLGLNG----- Clitaetra_perroti_CL14_Mont ---------GAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLILLFISSMVEMGVGSGWTVYPPLASLEGHSDSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMDKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Clitaetra_perroti_CL15_Mont -------------AMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLILLFISSMVEMGVGSGWTVYPPLASLEGHSDSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMDKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLF----------LILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETSLLWCMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGVTYWFPLFFGFVFNQKKSKLQFYIMFMGVNMTFFPQHFLGLNGMP--- Clitaetra_perroti_CL16_Mont ------------AAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLILLFISSMVEMGVGSGWTVYPPLASLEGHSDSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMDKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGG----------WFFGHPEVYILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVG{M S}DVDTRAYFTAATMIIAVPTGIKIFSWMATLHG{S W}YFKLETSLLWCMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGVTYWFPLFFGFVFNQKKSKLQFYIMFMGVNMTFF-------------- Clitaetra_perroti_CL13_Mont -------IFGAWAAMVGTAMSVLIRTELGQPGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLILLFVSSMVEMGVGSGWTVYPPLASLEGHSDSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMDKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFWFF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_episinoides_CL17 -IGTLYL{I L}FG{A P}WAAMVGTAMSVLIRTELGQSGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFW------------------------------------------------------------------------------------------------KLETPLLWSMGFVFLFTLGGITGVVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMMFSNKKSKLQFYIMFVGVNMTFFPQHFLGLNGMPRR- Clitaetra_episinoides_CL18 ----------AWAAMVGTAMSVLIRTELGQSGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Clitaetra_episinoides_CL19 -----YLIFGAWAAMVGTAMSVLIRTELGQSGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILF------------YILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETPLLWSMGFVFLFTLGGITGVVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMMFSNKKSKLQFYIMFVGVNMTFFPQHFLGLNGMPR-- Clitaetra_episinoides_CL20 --------FGAWAAMVGTAMSVLIRTELGQSGSFMGDDQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEMGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHFLIFWVILEVYILILPGFGIVSHIISASVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLETPLLWSMGFVFLFTLGGITGVVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMMFSNKKS------------------------------ Clitaetra_irenae_CL25 --GTLYLIFGAWAAMVGTAMSVLIRMELGQPGSFLGDNQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEVGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPIL-------FGHPEVYILILPGFGIVSHIISSSVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLDTPLLWSMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMLFNSKKSKLQFFIMFVGVNMTFFP{P Q}HFLGLNGMPR-- Clitaetra_irenae_CL21 -----YLIFGAWAAMVGTAMSVLIRMELGQPGSFLGDNQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEVGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQH------HPEVYILILPGFGIVSHIISSSVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLDTPLLWSMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMLFNSKKSKLQFFIMFVGVNMTFFPQHFLGLNG----- Clitaetra_irenae_CL23 -IGTLYLIFGAWAAMVGTAMSVLIRMELGQPGSFLGDNQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEVGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLF------EVYILILPGFGIVSHIISSSVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLDTPLLWSMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMLFNSKKSKLQFFIMFVGVNMTFFPQHFLGLNGM---- Clitaetra_irenae_CL26 -----YLIFGAWAAMVGTAMSVLIRMELGQPGSFLGDNQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEVGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDP-------------EVYILILPGFGIVSHIISSSVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLDTPLLWSMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMLFNSKKSKLQFFIMFVGVNMTFFPQHFLGLNGMPRP- Clitaetra_irenae_CL28 --GTLYLIFGAWAAMVGTAMSVLIRMELGQPGSFLGDNQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEVGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGG-------------HPEVYILILPGFGIVSHIISSSVGKREPFGNLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMIIAVPTGIKIFSWMATLHGSYFKLDTPLLWSMGFVFLFTLGGITGVVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAILGGITYWFPLFFGMLFNSKKSKLQFFIMFVGVNMTFFPQHFLGLNGMP--- Clitaetra_irenae_CL22 -IGTLYLIFGAWAAMVGTAMSVLIRMELGQPGSFLGDNQLYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMLGAPDMAFPRMNNLSFWLLPPSLFLLFISSMVEVGVGSGWTVYPPLASLEGHSGSSVDFAIFSLHLAGASSIMGAINFISTIMNMRSYGMTMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPSGGGDPILFQHLFW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ; END; BEGIN TREES; Title Trees; LINK Taxa = Sequences; TRANSLATE 1 Deinopis_spinosa_GB, 2 Argiope_argentata_GB, 3 Nephila_inaurata_NE22_Mauritius, 4 Nephilengys_malabarensis_GB, 5 Herennia_multipuncta_GB, 6 Clitaetra_thisbe_CL30, 7 Clitaetra_thisbe_CL31, 8 Clitaetra_perroti_CL1_Am, 9 Clitaetra_perroti_CL2_Am, 10 Clitaetra_perroti_CL3_Am, 11 Clitaetra_perroti_CL4_Am, 12 Clitaetra_perroti_CL5_Am, 13 Clitaetra_perroti_CL7_Am, 14 Clitaetra_perroti_CL9_Am, 15 Clitaetra_perroti_CL10_Am, 16 Clitaetra_perroti_CL11_Am, 17 Clitaetra_perroti_CL8_Am, 18 Clitaetra_clathrata1, 19 Clitaetra_clathrata2, 20 Clitaetra_perroti_CL12_Mont, 21 Clitaetra_perroti_CL14_Mont, 22 Clitaetra_perroti_CL15_Mont, 23 Clitaetra_perroti_CL16_Mont, 24 Clitaetra_perroti_CL13_Mont, 25 Clitaetra_episinoides_CL17, 26 Clitaetra_episinoides_CL18, 27 Clitaetra_episinoides_CL19, 28 Clitaetra_episinoides_CL20, 29 Clitaetra_irenae_CL25, 30 Clitaetra_irenae_CL21, 31 Clitaetra_irenae_CL23, 32 Clitaetra_irenae_CL26, 33 Clitaetra_irenae_CL28, 34 Clitaetra_irenae_CL22; TREE 'BayesianFullCOI 14 sept 2011 4KK+' = (1:0.512061,2:0.326759,(3:0.225784,((6:0.00184,7:0.001604)1.00:0.352141,((4:0.32537,5:0.214025)0.61:0.078278,(((11:8.61E-4,(9:0.002627,10:0.001638)0.50:0.002548)0.52:0.001613,((15:0.001679,(14:0.001653,16:0.001839)0.13:0.001623)0.07:0.00177,((8:0.001033,12:8.22E-4)0.09:7.24E-4,(13:8.29E-4,17:8.84E-4)0.10:9.24E-4)0.03:7.42E-4)0.32:0.001474)1.00:0.08607,((22:0.002166,(21:0.00153,(23:0.001301,(20:0.002601,24:0.001611)0.97:0.001694)0.61:0.002411)0.50:0.002625)1.00:0.112859,(18:0.230363,((25:0.001523,(26:0.002167,(27:0.001058,28:0.003099)0.64:0.005248)0.63:0.004948)1.00:0.187918,(34:0.002067,((29:0.001027,33:0.0010)0.13:0.001073,(32:0.001014,(30:9.77E-4,31:0.001063)0.12:0.001069)0.06:0.001032)0.20:0.001967)1.00:0.218199)0.54:0.059386)0.91:0.060846)0.73:0.03316)1.00:0.145372)0.36:0.029747)0.68:0.059295)0.96:0.104231); TREE BayesianConcat_final = (1:0.551844,2:0.343093,((3:0.153498,(6:0.0011,7:0.001288)1.00:0.484484)0.93:0.081251,((4:0.343524,5:0.198202)0.91:0.103355,((18:0.005063,19:0.004745)1.00:0.264719,((34:0.00118,(29:8.56E-4,((30:6.8E-4,31:7.21E-4)0.13:7.0E-4,(32:8.63E-4,33:8.29E-4)0.14:8.58E-4)0.07:8.45E-4)0.15:0.001201)1.00:0.468447,(((25:0.0014,(26:0.001303,(27:9.18E-4,28:0.002776)0.75:0.005204)0.54:0.003053)1.00:0.153497,(22:0.001944,(21:9.9E-4,(23:0.001126,(20:0.002041,24:0.001009)0.97:0.001164)0.58:0.001807)0.47:0.00174)1.00:0.070002)0.64:0.014292,((11:6.84E-4,(9:0.002196,10:0.001333)0.56:0.002274)0.48:0.001106,((15:0.001101,(14:0.00103,16:0.001572)0.12:0.001156)0.04:0.001297,((8:8.33E-4,13:6.79E-4)0.09:7.6E-4,(12:7.25E-4,17:6.69E-4)0.12:5.8E-4)0.03:5.71E-4)0.29:0.001081)1.00:0.052249)1.00:0.117945)0.79:0.067119)1.00:0.13272)0.65:0.048719)0.99:0.111226); END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = 'CO1 (from Phred/Phrap)') = N: 1281- 1908 , 1: 1 - 1279\3, 2: 2 - 1280\3, 3: 3 - 1278\3; CODESET * UNTITLED (CHARACTERS = 'CO1 (from Phred/Phrap)') = universal: 1281 - 1908, mtdna.dros: 1 - 1280; CODESET * UNTITLED (CHARACTERS = 'Protein translation of CO1 (from Phred/Phrap)') = universal: 1 - 427; END; BEGIN LABELS; TAXAGROUPLABEL Ambohitantely COLOR = (RGB 1.0 0.63529412 0.63529412) ; TAXAGROUPLABEL 'Montagne d''Ambre' COLOR = (RGB 1.0 0.25490196 0.06666667) ; TAXAGROUPLABEL Mayotte COLOR = (RGB 0.30196078 0.58039216 1.0) ; TAXAGROUPLABEL Africa COLOR = (RGB 0.31764706 0.36862745 0.24313725) ; TAXAGROUPLABEL thisbe COLOR = (RGB 0.37254902 0.40392157 0.53333333) ; TAXAGROUPLABEL clathrata COLOR = (RGB 0.43529412 0.02745098 0.27058824) ; CHARGROUPLABEL 'CO1 (from Phred/Phrap)'; CHARGROUPLABEL 'ITS (from Phred/Phrap)'; END; BEGIN SETS; TAXPARTITION * UNTITLED = thisbe : 6 - 7, Ambohitantely : 8 - 17, clathrata : 18 - 19, 'Montagne d''Ambre' : 20 - 24, Mayotte : 25 - 28, Africa : 29 - 34; CHARPARTITION * UNTITLED (CHARACTERS = 'CO1 (from Phred/Phrap)') = 'CO1 (from Phred/Phrap)' : 1 - 1280, 'ITS (from Phred/Phrap)' : 1281 - 1908; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'CO1 (from Phred/Phrap)') = 'Jukes-Cantor': 1 - 1908; ProbModelSet * UNTITLED (CHARACTERS = 'Protein translation of CO1 (from Phred/Phrap)') = 'Mk1 (est.)': 1 - 427; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'CO1 (from Phred/Phrap)') = unord: 1 - 1908; TYPESET * UNTITLED (CHARACTERS = 'Protein translation of CO1 (from Phred/Phrap)') = unord: 1 - 427; END; BEGIN NOTES; SUT TAXA = Sequences TAXON = 2 NAME = origName STRING = CL4; SUT TAXA = Sequences TAXON = 2 NAME = VoucherCode STRING = CL4; SUT TAXA = Sequences TAXON = 3 NAME = origName STRING = CL7; SUT TAXA = Sequences TAXON = 3 NAME = VoucherCode STRING = CL7; SUT TAXA = Sequences TAXON = 4 NAME = origName STRING = CL9; SUT TAXA = Sequences TAXON = 4 NAME = VoucherCode STRING = CL9; SUT TAXA = Sequences TAXON = 5 NAME = origName STRING = Clitaetra_CL14; SUT TAXA = Sequences TAXON = 5 NAME = VoucherCode STRING = CL14; SUT TAXA = Sequences TAXON = 6 NAME = origName STRING = Clitaetra_CL10; SUT TAXA = Sequences TAXON = 6 NAME = VoucherCode STRING = CL10; SUT TAXA = Sequences TAXON = 7 NAME = origName STRING = Clitaetra_CL18_ITS4; SUT TAXA = Sequences TAXON = 7 NAME = VoucherCode STRING = CL18; SUT TAXA = Sequences TAXON = 8 NAME = origName STRING = Clitaetra_CL13; SUT TAXA = Sequences TAXON = 8 NAME = VoucherCode STRING = CL13; SUT TAXA = Sequences TAXON = 9 NAME = origName STRING = Clitaetra_CL21; SUT TAXA = Sequences TAXON = 9 NAME = VoucherCode STRING = CL21; SUT TAXA = Sequences TAXON = 10 NAME = origName STRING = Clitaetra_CL22; SUT TAXA = Sequences TAXON = 10 NAME = VoucherCode STRING = CL22; SUT TAXA = Sequences TAXON = 11 NAME = origName STRING = Clitaetra_CL23; SUT TAXA = Sequences TAXON = 11 NAME = VoucherCode STRING = CL23; SUT TAXA = Sequences TAXON = 12 NAME = origName STRING = Clitaetra_CL30; SUT TAXA = Sequences TAXON = 12 NAME = VoucherCode STRING = CL30; SUT TAXA = Sequences TAXON = 13 NAME = origName STRING = Clitaetra_CL31_ITS5.8; SUT TAXA = Sequences TAXON = 13 NAME = VoucherCode STRING = CL31; SUT TAXA = Sequences TAXON = 14 NAME = origName STRING = CL9; SUT TAXA = Sequences TAXON = 14 NAME = VoucherCode STRING = CL9; SUT TAXA = Sequences TAXON = 15 NAME = origName STRING = Clitaetra_CL10; SUT TAXA = Sequences TAXON = 15 NAME = VoucherCode STRING = CL10; SUT TAXA = Sequences TAXON = 16 NAME = origName STRING = Clitaetra_CL11; SUT TAXA = Sequences TAXON = 16 NAME = VoucherCode STRING = CL11; SUT TAXA = Sequences TAXON = 17 NAME = origName STRING = CL8; SUT TAXA = Sequences TAXON = 17 NAME = VoucherCode STRING = CL8; SUT TAXA = Sequences TAXON = 20 NAME = origName STRING = Clitaetra_CL12; SUT TAXA = Sequences TAXON = 20 NAME = VoucherCode STRING = CL12; SUT TAXA = Sequences TAXON = 21 NAME = origName STRING = Clitaetra_CL14; SUT TAXA = Sequences TAXON = 21 NAME = VoucherCode STRING = CL14; SUT TAXA = Sequences TAXON = 22 NAME = origName STRING = Clitaetra_CL15; SUT TAXA = Sequences TAXON = 22 NAME = VoucherCode STRING = CL15; SUT TAXA = Sequences TAXON = 23 NAME = origName STRING = Clitaetra_CL16; SUT TAXA = Sequences TAXON = 23 NAME = VoucherCode STRING = CL16; SUT TAXA = Sequences TAXON = 24 NAME = origName STRING = Clitaetra_CL13; SUT TAXA = Sequences TAXON = 24 NAME = VoucherCode STRING = CL13; SUT TAXA = Sequences TAXON = 25 NAME = origName STRING = Clitaetra_CL17; SUT TAXA = Sequences TAXON = 25 NAME = VoucherCode STRING = CL17; SUT TAXA = Sequences TAXON = 26 NAME = origName STRING = Clitaetra_CL18; SUT TAXA = Sequences TAXON = 26 NAME = VoucherCode STRING = CL18; SUT TAXA = Sequences TAXON = 27 NAME = origName STRING = Clitaetra_CL19; SUT TAXA = Sequences TAXON = 27 NAME = VoucherCode STRING = CL19; SUT TAXA = Sequences TAXON = 28 NAME = origName STRING = Clitaetra_CL20; SUT TAXA = Sequences TAXON = 28 NAME = VoucherCode STRING = CL20; SUT TAXA = Sequences TAXON = 29 NAME = origName STRING = Clitaetra_CL25; SUT TAXA = Sequences TAXON = 29 NAME = VoucherCode STRING = CL25; SUT TAXA = Sequences TAXON = 30 NAME = origName STRING = Clitaetra_CL21; SUT TAXA = Sequences TAXON = 30 NAME = VoucherCode STRING = CL21; SUT TAXA = Sequences TAXON = 31 NAME = origName STRING = Clitaetra_CL23; SUT TAXA = Sequences TAXON = 31 NAME = VoucherCode STRING = CL23; SUT TAXA = Sequences TAXON = 32 NAME = origName STRING = Clitaetra_CL26; SUT TAXA = Sequences TAXON = 32 NAME = VoucherCode STRING = CL26; SUT TAXA = Sequences TAXON = 33 NAME = origName STRING = Clitaetra_CL28; SUT TAXA = Sequences TAXON = 33 NAME = VoucherCode STRING = CL28; SUT TAXA = Sequences TAXON = 34 NAME = origName STRING = Clitaetra_CL22; SUT TAXA = Sequences TAXON = 34 NAME = VoucherCode STRING = CL22; CHARACTERS = 'CO1 (from Phred/Phrap)' TAXA = Sequences; SU T = 20 C = 23 N = chromaseqStatus I = 2; SU T = 20 C = 24 N = chromaseqStatus I = 2; SU T = 31 C = 25 N = chromaseqStatus I = 2; SU T = 10 C = 26 N = chromaseqStatus I = 2; SU T = 24 C = 26 N = chromaseqStatus I = 2; SU T = 31 C = 26 N = chromaseqStatus I = 2; SU T = 24 C = 27 N = chromaseqStatus I = 2; SU T = 31 C = 27 N = chromaseqStatus I = 2; SU T = 32 C = 27 N = chromaseqStatus I = 2; SU T = 31 C = 28 N = chromaseqStatus I = 2; SU T = 12 C = 30 N = chromaseqStatus I = 2; SU T = 31 C = 30 N = chromaseqStatus I = 2; SU T = 12 C = 31 N = chromaseqStatus I = 2; SU T = 24 C = 33 N = chromaseqStatus I = 2; SU T = 31 C = 34 N = chromaseqStatus I = 2; SU T = 24 C = 36 N = chromaseqStatus I = 2; SU T = 24 C = 53 N = chromaseqStatus I = 2; SU T = 29 C = 58 N = chromaseqStatus I = 2; SU T = 29 C = 59 N = chromaseqStatus I = 2; SU T = 29 C = 61 N = chromaseqStatus I = 2; SU T = 13 C = 62 N = chromaseqStatus I = 2; SU T = 17 C = 89 N = chromaseqStatus I = 2; SU T = 34 C = 89 N = chromaseqStatus I = 2; SU T = 24 C = 96 N = chromaseqStatus I = 2; SU T = 10 C = 566 N = chromaseqStatus I = 2; SU T = 10 C = 567 N = chromaseqStatus I = 2; SU T = 12 C = 567 N = chromaseqStatus I = 2; SU T = 15 C = 567 N = chromaseqStatus I = 2; SU T = 32 C = 580 N = chromaseqStatus I = 2; SU T = 13 C = 604 N = chromaseqStatus I = 2; SU T = 13 C = 616 N = chromaseqStatus I = 2; SU T = 13 C = 622 N = chromaseqStatus I = 2; SU T = 13 C = 623 N = chromaseqStatus I = 2; SU T = 13 C = 624 N = chromaseqStatus I = 2; SU T = 9 C = 646 N = chromaseqStatus I = 2; SU T = 11 C = 657 N = chromaseqStatus I = 2; SU T = 11 C = 658 N = chromaseqStatus I = 2; SU T = 11 C = 659 N = chromaseqStatus I = 2; SU T = 11 C = 662 N = chromaseqStatus I = 2; CHARACTERS = 'Protein translation of CO1 (from Phred/Phrap)' TAXA = Sequences; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1336491773765; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5946264252775706972; tell It; setDefaultOrder 14 2 4 7 25 8 29 24 45 46 47 50 52 12 13 9 6 32 36 10 12 13 14 11 15 16 17 18 22 19 21 23 24 20; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2075555317477596394; mqVersion 275; checksumv 0 3 2592431781 null getNumChars 1908 numChars 1908 getNumTaxa 34 numTaxa 34 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 1118410.0 sumSquares -7.593141029340694E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2; mqVersion; setID 1 5179357342271402386; mqVersion 275; checksumv 1 3 1909490074 null getNumChars 427 numChars 427 getNumTaxa 34 numTaxa 34 short false bits 2305843009214742527 states 1048575 sumSquaresStatesOnly 1.05600584204668E14 sumSquares 4.6117916190113495E18 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 2; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 244; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1351 630; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1107 563; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5946264252775706972 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2397.1309976108213.1847699098079944336; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1107 563; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition on; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2075555317477596394 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 194; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1107 563; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames on; toggleShowDefaultCharNames off; toggleConstrainCW on; setColumnWidth 16; toggleBirdsEye on; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; newAssistant #mesquite.distance.ShowDistance.ShowDistance; tell It; getEmployee #mesquite.distance.TaxaDistFromMatrixSrc.TaxaDistFromMatrixSrc; tell It; getMatrixSource #mesquite.charMatrices.CharMatrixCoordIndep.CharMatrixCoordIndep; tell It; setCharacterSource #mesquite.charMatrices.StoredMatrices.StoredMatrices; tell It; setDataSet #2075555317477596394; endTell; endTell; setDistanceTask #mesquite.distance.UncorrectedDistance.UncorrectedDistance; endTell; endTell; endTell; showWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #5179357342271402386 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1107 563; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;